pdagosto

I'm seeing something similar with snakemake 7.14.0. I have two pipelines that are using pipes demarcated by wildcards, e.g. rule1_R1, rule1_R2, rule2_R1, rule2_R2, etc. that should execute in parallel (see...

Yes - same problem with 7.3.2

All I did was ask the emacs package installer to install the package. The compilation was performed automatically by emacs.

I already told you the step - install the package with the package manager. That's all I did.

I'm seeing this same issue with 7.18.2. It was working before but now I'm seeing my workflow hang without making progress.

The original problem I posted is still present in version 6.8. When you say convert pipe to temp do you mean create concrete files instead of streaming between steps? That...

I'm only working in development mode now so the data files are small. I haven't actually tried it with our actual data files which can be hundreds of GB in...

Based on experience I doubt that would help. There are many steps in the pipeline and hundreds of GB of data would be redundantly read, written (and now compressed) to...