Pablo Moreno
Pablo Moreno
This PR pins numpy to avoid issues on fresh installations as described in #477 . If you had this already on some other branch waiting to be merged, feel free...
I have been running planemos tests this morning for some tools (latest planemo version), and for different output formats (png, H5, etc) outputs, when compared by size, I get that...
I recently updated docker to `Docker version 24.0.6, build ed223bc`, but now when running planemo with --biocontainers, tools fail to run with an error 125 showing: ``` docker: invalid spec:...
Sometimes, AnnData files will include other flavours in the .X, but not the log normalised version of the matrix. Would you be able to add an option in the CLI...
When running cbScanpyImport on processes where you are constrained by memory (ie cloud VMs), the OS killing the process due to OOM ends up with cbScanpyImport exiting with a zero...
**Describe the bug** The following GTF URL from 10x fails to be downloaded from 3 different galaxy instances (Org, EU, private 22.05 and another private one on a different version)....
A call from seurat-disk where it does: ``` dfile$obj_copy_from( src_loc = source, src_name = 'obs', dst_name = 'meta.data' ) ``` generates the following error: ``` Error in dfile$obj_copy_from(src_loc = source,...
I used to call this role within a playbook at version 0.8.4 and executing a call in the form of: ``` ansible-playbook --become --become-user=gxa_galaxy --inventory=hosts playbook/playbook.yml ``` used to work....
This PR aims to add the EMBL-EBI Single Cell Expression Atlas downstream analysis workflow as used to produce data with the resource, with a hopefully lightweight example. I have a...
This one is a tricky one. Most "base" tools normally work with the same galaxy container, however the Expression tool parse_parameter fails because the container seems to lack node or...