Request: allow to specify AnnData layer to use

Open pcm32 opened this issue 2 years ago • 1 comments

Sometimes, AnnData files will include other flavours in the .X, but not the log normalised version of the matrix. Would you be able to add an option in the CLI that would allow us to specify the AnnData layer to use instead of .X? Otherwise we would need to read the AnnData, modify it, save it and then load it into cell typist.

Thanks!

Oct 09 '23 22:10 pcm32

@pcm32, layers are currently not supported; will add this option in the new version probably. Thanks for this suggestion.

Oct 13 '23 10:10 ChuanXu1