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                                            Pablo Cingolani

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Feature Request: structured data in VCF:INFO (XML, JSON ?)

-1 (actually -99999999999999999) I think this is a terrible idea, akin to supporting structured data types inside a FASTA header. Parsing a VCF file, which can now roughly be done...

how to build a .gtf for simple ATG-to-stop codon CDS references

The error message says: ``` ERROR: CDS check file '/home/penguin/snpEff/./data/Khanna_j4h_8_DMX8/cds.fa' not found. ERROR: Protein check file '/home/penguin/snpEff/./data/Khanna_j4h_8_DMX8/protein.fa' not found. ERROR: Database check failed. ``` This means that there was no...