Phil Chlap
Phil Chlap
Hi Andrew, thanks a lot for this great script. We are currently just trying to get the script working with our Pinnacle versions (9.0 and up). Everything seems to be...
- [x] Visualisation (already exists) - [ ] Image registration (Rob) - [x] Atlas based segmentation (Phil) - [ ] Synthetic deformation (fast example) (Rob) - [x] Contour comparison metrics...
Nice work! I'm not sure if timing is really an issue, but the distance maps can take a while to compute so an alternative could be to dilate each contour...
- [ ] make pylint pass (rename variables + function + class names) - [x] add docstrings for all functions + classes - [x] rename/move modules where needed - [x]...
Create dummy spline for cardiac end-to-end pseudo test data
Would be useful when training a 2D U-Net to visualise just the 2D slices
Make more explicit in logging during atlas part.