pcamach2

@effigies, no worries! A lot has been updated for both toolkits in the meantime, so I processed a dataset with the latest FastSurfer (v2.2.0) and then used it as an...

Ah, my mistake. The midthickness issue popped up when I used output from an older version of FastSurfer (version < 2.X). I pulled a local copy of the templates with...

@margokersey, if you have access to a machine running Docker, one method would be to pull the branch, start a temporary local registry, build and push the docker image, and...

To get a faster node allocation, I try to stay at or below 256G, but I have tried this with up to 500G of memory requested for the slurm job....

Using `dwidenoise` has resolved the stuck process in `hstack_confounds`: ``` [Node] Setting-up "qsiprep_wf.single_subject_SAY277_wf.dwi_preproc_ses_A_run_1_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_A_run_1_dwi_wf.hstack_confounds" in "/sing_scratch/qsiprep_wf/single_subje> 231006-15:01:34,587 nipype.workflow INFO: [Node] Executing "hstack_confounds" 231006-15:01:34,594 nipype.workflow INFO: [Node] Finished "hstack_confounds", elapsed time 0.006104s....