Paul Blischak

The way that I am storing the input data (total and alt reads) is to push them linearly into an integer vector. A user has noted that large data sets...

The log likelihoods of the different models are computed using log sums of exponentials, which can have nasty overflow/underflow problems (cf. [this link](https://hips.seas.harvard.edu/blog/2013/01/09/computing-log-sum-exp/)). I've run into this problem when read...

Things to consider for a slightly updated version of HyDe: - Python has been standardizing its build process - Python 2 is deprecated

Graphical User Interface Beta Testers

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I've been working on a v1.0 release of HyDe that cleans up and reorganizes the code and moves support over to Python 3.6+ only. The visualization module is being removed...