HyDe

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Curious About Gene Flow Direction in Hybrid Detection Results of HyDe

1

Dear Professor, Great software! But i am reaching out to discuss an issue I encountered concerning the detection of hybrids. In my analysis, I used four species: A, B, C,...

Jhe1004

Dear Paul, I have a qustion about the Gamma. I have 2 species: Cgi and Cdu. Based on Admixture anaylsis, we found that Cdu can be divided into two lineages...

Wennie-s

how to determine the hybrid species in the result of exhaustive search

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Dear professor, Thanks for the convinient software ! I recently applied HyDe to detect hybridization events among 11 goups. I performed analysis for all combinations of triplets , which revealed...

bettermaan

Interpretation of bootstrap results

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Greetings @pblischak and @lkubatko, I have been using HyDe as a tool for the analysis of possible hybridization between closely related taxa. The program is working as intended and I...

pmomadeira

the significant results means tested species is a hybrid or just have gene flow?

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Dear professor, Great software! I have an issue about the results about the hybrid. Here is the situation of my tests. I use there species of A, B, C and...

CrawlingSponge

Question about the

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Hi Paul, Amazing software! I have several questions about the HyDe. I see the input data should be diploid data or ambiguous sites. But here I have a diploid species...

Orz-CQ

why my results gamma were nan and the AAAA AAAB ......were 0.0？

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P1 Hybrid P2 Zscore Pvalue Gamma AAAA AAAB AABA AABB AABC ABAA ABAB ABAC ABBA BAAA ABBC CABC BACA BCAA ABCD sp37 sp48 sp41 12.6491106407 0.0 nan 80640208.0 0.0 0.0...

yuanjigui

Things to consider for a slightly updated version of HyDe: - Python has been standardizing its build process - Python 2 is deprecated

pblischak

Installation of HyDe : problem in make test

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Hi I am trying to install Hyde in virtual linux machine. I created a virtual environment with python3.6. and installed HyDe. The installation was completed but got following error after...

snehasjoshi

HyDe is installed while make test does not worked

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Hi @pblischak , I've finished the installation work of HyDe, but I got some error when I typed 'make test', the result as below, `**** Testing run_hyde.py (full analysis). ****...

Yung-Chien