Anders Lind
Anders Lind
### Feature When adding a lot of information to a node, the three will obviously become very large. However, the tree remains this massive even if I collapse the huge...
Could this be used to remove an issue from a project? I'm thinking could one check if github.event.issue.labels.*.name **does not** contain a certain label? If so, remove it from stated...
It would be great if these scripts would also be installed together with the r-packages. This would allow for a much cleaner/reproducible setups in for instance snakemake workflow.
## Need SNV vcfs are annotated using the VEP plugin SpliceAI **Information:** https://github.com/Ensembl/VEP_plugins/blob/release/110/SpliceAI.pm https://pypi.org/project/spliceai/ ## Suggested approach Use the VEP module spliceAI with the final vcf files. Similar to how...
## Need To reduce the number of variants uploaded to scout, we should filter out the one that comes from local technical artefacts. ## Suggested approach Use LocusDB to remove...
## Need oncoBB annotation in BALSAMIC output. **Information:** https://www.oncokb.org/ ## Suggested approach *A few sentences about the intended solution* ## Considered alternatives *Were there alternative approaches which have been rejected?*...
### Need As a hospital administrator I want the pipeline to use GATK version 4 rather than 3 as the license for GATK 4 is free to use, but GATK...
**Describe the bug** Teresita sent in a ticket where she flagged that she doesn't recognise the sort order of the variants in the file SNV.somatic.XXXXXXXXX.vardict.vcf.gz (case name removed). More info...
### Need As a production bioinformatician I want all needed reference files to be downloaded when running `BALSAMIC init`, so I can easily install new versions on various HPCs. ###...
### Need As a developer I want to generate all BALSAMIC panel of normals using the [nf-core createpanelrefs pipeline](https://nf-co.re/createpanelrefs/dev) so I don't have to maintain PON generation workflows in BALSAMIC...