Christopher Dunn
Christopher Dunn
Set `@GW_USE_DEVICE_ALLOCATOR_FILE@` based on `gw_enable_caching_allocator`, to include only one DefaultDeviceAllocator for a given installation. This way, after the library is built and installed, the user does not need to specify...
If I accidentally delete or over-write an S3 object, I need a way to recover a previous version. I guess it would be helpful to _list_ the available versionids too....
From DNANexus, privately. Jason, this was the most recent code exchanged. It has not caused me any problems, but I have not looked into this matter very deeply either.
This Issue is to track the development of a new program to import gzipped fastas into a new DAZZ_DB.
Stage-0: ``` sh $ ls -lgGtr 0-rawreads/job_0000/ lrwxrwxrwx 1 96 May 20 10:14 raw_reads.db -> FULLPATH/0-rawreads/raw_reads.db -rw-rw-r-- 1 4257028 May 20 10:15 L1.4.19.las -rw-rw-r-- 1 4251836 May 20 10:15 L1.7.19.las...
(UPDATE: Unable to repro, but see comment further down.) I now know why one of my perfect contigs is shorter than the other in my 5k test. Some alignments have...
New requirements, based on discussions with dgordon. - Definitely copy DB for LA4Falcon. - Maybe also copy `*.las`. - Low priority, since these are read sequentially. dgordon has not seen...
Have you tried to use **parasail** on a recent Mac with the M1 processor? I have hit this: ```cpp ccache cc -Isubprojects/parasail/contrib/libssw.a.p -Isubprojects/parasail/contrib -I../subprojects/parasail/contrib -Isubprojects/parasail -I../subprojects/parasail -Isubprojects/parasail/src -I../subprojects/parasail/src -Xclang -fcolor-diagnostics...
With "-f" flag, the "rm *.las" lines went to stdout rather than into ".RM.OPT" script.
There are tons of GcUnsafe2 warnings now, using nim-HEAD: ``` nim-heap/binaryheap.nim(45, 4) Warning: 'propFulfilled' is not GC-safe as it performs an indirect call here [GcUnsafe2] h.comp(h.data[indParent], h.data[indChild])