paupuigdevall

Error when creating SCANVI model with tutorial

3

I'm trying to reproduce the semi-supervised pipeline in here [https://scarches.readthedocs.io/en/latest/scanvi_surgery_pipeline.html], but the pipeline is failing when trying to build the model using the reference dataset: >>> sca.models.SCANVI.setup_anndata(source_adata, batch_key=condition_key, labels_key=cell_type_key) Traceback...

Error in Initializing RNA with data

4

Hi. This is probably not directly related to SeuratDisk function, but when attempting to read a large .h5ad converted to .h5seurat by Convert(), the loading crashed in LoadH5Seurat(). The dataset...