paulzierep

@KasperSkytte that is sad to hear, we really like the tool. We will in general use it for multiple workflows in Galaxy, since the plots are awesome. Unfortunately, I seldom...

@KeteSakharova maybe as a bit more context, I am working for the Galaxy Team in Freiburg. We might try to add some parts of the MGnify pipeline to galaxy (some...

One major issue atm is, that only leaf counts are supported by taxonkit https://github.com/shenwei356/taxonkit/issues/99#issuecomment-2203369757 If this is fixed I think it would work seamless with taxpasta.

Just some additional information: The wrapper is currently maintained here: https://github.com/bgruening/galaxytools/tree/master/tools/antismash (wrong annotation in the .shed.yml file) The conda recipe for 7.1.0-0 is there. We will look into it.

It seems that this is the error we get for all tests: ``` Error in checkForRemoteErrors(val) : 4 nodes produced errors; first error: object 'current_args' not found Calls: Maaslin2 ......

@renu-pal Can you change `\${GALAXY_SLOTS:-4}` to 1 and push before our meeting please ? This is just a gut feeling, but the error comes after: ``` 2024-06-19 22:17:09.828373 INFO::Filtered feature...

I did a rather stupid test locally, but using `--cores 1` works and using `--cores 4` fails with the given error. It seems that there is something internally with the...

Lets see: https://forum.biobakery.org/t/maaslin2-1-16-0-fails-with-more-then-1-cpu/7172

@bernt-matthias @bgruening wdyt good to merge ? The limit to 1 cpu is not ideal, but we can update when the devs fix it ...

> Feel free to add the suggested change if you like. Then I can merge tomorrow. > > Note that if there are Galaxy servers that enabled more resources (TPV)...