Paul Lang

Results 25 comments of Paul Lang

@isaacsas : that would be great. But not urgent rn.

Hi @isaacsas ! Thanks for getting back. To my knowledge there are clear conventions. There are microscopic/stochastic and macroscopic/deterministic rate laws. So for mass action reactions - Microscopic rate laws...

@isaacsas yes, you are completly right. sorry for my confusion and thanks for the discussion. it does make sense to loose the `-1` here. And I also think it does...

Well, would be nice to see if Catalyst updates break SBMLTk. Even before it is stable. But testing SBMLTk costs some time, so Idk if it should be triggered on...

Thank you very much for helping with our SBML efforts! Greatly appreciated. First, I have to ask the following: what is the dimension of kinetic laws in a `ReactionSystem`? My...

I also like the idea of keeping `ReactionSystem`s as minimal and barebones as needed. In particular, like SBML and also BNGL, a `ReactionSystem` description should stay agnostic about the algorithm...

Hi, Just trying to catch up on this. How shall we best proceed?

> what about jumps? Mhh, this is actually a problem, as we would get non-integer values, right. Perhaps the cleanest approach would be that we do not directly translate SBML...

My impression is that SBML encodes models without being clear if they are for ODEs or jumps. - SBML allows you to set SBO terms to indicate whether a given...

Oh sorry, I thought #312 was closed and wanted to start a cleaner discussion here. But it isn't so this and #312 are kind of duplicates.