Paul Shannon

resizable boxes?

2

If individual boxes could be resized via direct manipulation - the usual click-corner-and-drag gesture - the user would be empowered, free to size each box as they wish according to...

dynamics? animation, simulation...

1

This is a naive question. I offer apologies in advance. I have been delighted by the power of ngl.js, which I currently use via an R/shiny app. Our first application...

very large networks ( > 1M nodes) possible?

6

Intrigued to discover this project. Before diving in, may I ask if Graphosaurus supports very large networks, with > 10^6 nodes? Thanks! - Paul

subscribe example?

2

?subscribe does not show an example (as far as I could see). experimentation failed: context

guidance on rendering timevisBasic outside of a shiny app, within RStudio; sizing policy

2

@daattali I've been working on a couple of shiny widgets (igvShiny, cyjShiny) and stuck on these two problems - which may be related: 1. How to use a widget (yours...

automated testing of selectFirstNeighbors

1

@Dharna5599, Following (closely!) the programming style and logic of inst/unitTests/test_selection.R, please create a test script ```test_firstNeighborSelection.R``` which invokes, and tests the reliability, of this function in ```R/cyjShiny.R```: #' selectFirstNeighbors of...

drop webpack and all of its complexities

4

Hi @oshah97 new branch "abandonWebPack" is working. I suggest: ``` git clone https://github.com/cytoscape/cyjShiny.git cd cyjShiny git checkout abandonWebPack make install demo open http://localhost:9876 ```` The magic glue (pretty opaque to...

Set Node size / color / shape

5

@alptaciroglu posted an issue to paul-shannon/cyjShiny (just now belatedly archived, made read-only) about "bypass" methods for controlling node color and size. In response, I offer a new example [tinyApp.R](https://github.com/cytoscape/cyjShiny/tree/master/inst/examples/tinyApp) ...

chr19 data does not display except when chromome=="all"

"any data frame" flexibilty needed with gwas data

4

@vjcitn - new issue to ease tracking. emulate these parameters in igvR: ``` track