paturley

Hmm. I think this might be an error due to the way we index the traits when there are more than 10 input files. How many files are you trying...

Do you get the error when you use just 9 of the traits? On Fri, Aug 21, 2020 at 3:32 PM pjordab wrote: > Thank you very much for the...

Great! This bug is going to be a little more complicated to fix, but what you might try in the meantime is run MTAG on half of the cohorts at...

HI Paloma, We tried looking at this, but we didn't code it up in a very robust way, unfortunately. We have it on our list of things we need to...

Have you verified that the reference and alternate alleles in your data only contain A, T, C, and G for every SNP? On Sat, Aug 1, 2020, 2:20 AM huangjx1001...

This still looks like an error with the reference or alternate alleles in your data. Have you also checked the alternate allele column? Did you look at the reference and...

No problem. Glad to help. On Wed, Aug 5, 2020 at 11:10 PM huangjx1001 wrote: > You are right! I know where the problem is. Thanks a lot! > >...

Can you post the log file from your analysis? It may help diagnose what's going on. Also, have you verified that all the p-values are numeric? On Wed, Jan 22,...

It looks like the program is failing during the LDSC step. Does LD Score Regression run on your data if you run it directly? On Wed, Jan 22, 2020, 3:18...

This makes me suspect again that there may be inf or NaN values in your p-value column. Even if the column is typed as numeric, some of the values still...