Patricia Chan

icon indicating a website link http://trna.ucsc.edu/

icon location Santa Cruz, CA, USA icon location Research Scientist at @UCSC-LoweLab University of California Santa Cruz

Results 2 issues of Patricia Chan

Use --detail option with tRNAscan-SE

Currently R2DT uses the predicted tRNA isotype from tRNAscan-SE to select the corresponding template for Traveler 2D image generation. However, mt-tRNA-Cys in armadillo and some reptides do not have the...

Use alignments from tRNAscan-SE without re-creating them in R2DT

Instead of creating tRNA alignments with cmalign and tRNA covariance models, the alignments generated by tRNAscan-SE in the secondary structure output can be used. The alignments generated by tRNAscan-SE use...