Patrícia Rocha

Fixed Segments in Generated PDB Files Don't Match Reference PDB File

2

While performing motif scaffolding with RFdifussion, I have noticed that **the fixed segments in the generated PDB files do not exactly match those in the reference PDB file**. For example,...

Hi, I have a question regarding the binder generation and testing process mentioned in the README and the paper. In the [README](https://github.com/RosettaCommons/RFdiffusion?tab=readme-ov-file#binder-design-scale), it is stated that approximately **10,000 binder backbones...

Discrepancies in Absolute Coordinates & Missing Side Chains in Output

1

hi, I've noticed the following while experimenting with RFdiffusion: 1. The absolute coordinates of atoms in the output PDB files differ from those in the reference PDB files, even for...