bamsnap
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parklab
I was wondering if bamsnap supports PacBio CCS reads. When I use bamsnap with my CCS bam files, it produces the following error: ```bash Traceback (most recent call last): File...
Hi, Thank you for your great work. ^_^. Is there a parameter used to sort the aligntrack by base, just like igv? Thanks a lot, xiucz
Hey Daniel, I met this error when try to run bamsnap on a rna-seq bam file: ``` Process proc 1: Traceback (most recent call last): File "/home/cc439/anaconda3/lib/python3.7/multiprocessing/process.py", line 297, in...
Thank you so much for this great tool. I recently replace my visualization tools with bamsnap on our pipeline. However, today I just figured out that bamsnap didn't support mm10....
Hey @danielmsk Is it possible to use bamsnap programmatically - I have a few use cases where I'd like to embed some plots.
I have been struggling with KeyErrors in bamsnap `Process proc 1: Traceback (most recent call last): File "/home/jaesoon/miniconda3/envs/gunhee/lib/python3.6/multiprocessing/process.py", line 258, in _bootstrap self.run() File "/home/jaesoon/miniconda3/envs/gunhee/lib/python3.6/multiprocessing/process.py", line 93, in run self._target(*self._args,...
Thanks for this useful tool. Straightforward to use. Some fasta files contain lowercase characters (e.g. 'a' instead of 'A') and these characters cause the rendering to stop. The errors are...
I'd like to run bamsnap with a custom reference (assembly output). This works disabling the "gene" track with: ``` bamsnap -draw coordinates bamplot coverage base \ -out test.png -bam aln.bam...
Hi, Your software seems pretty straightforward to use, but somehow I cannot make it work. I have installed it and I can make it work on the test data from...
It would be great if it was possible to sort reads by tag and color then by tag (similar to IGV).
