bamsnap
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How to run with custom reference (es assembly)
I'd like to run bamsnap with a custom reference (assembly output). This works disabling the "gene" track with:
bamsnap -draw coordinates bamplot coverage base \
-out test.png -bam aln.bam -pos NODE_1_length_31064_cov_4.851893:1000 -ref contigs.fasta
A warning could be useful to figure this out.