panoptes
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Monitor computational workflows in real time
**Is your feature request related to a problem? Please describe.** When having a high number of jobs, it is hard to get quickly to the ones failed or still running...
**Is your feature request related to a problem? Please describe.** When having several hundreds of jobs, getting a good sense of the progression of each of job is very difficult....
**Describe the bug** Might be a `snakemake` bug but, jobs show up as duplicated. While a rule is running, there are two jobs with `Status` set as `Running` and no...
**Describe the bug** Cannot delete a single/specific workflow. However, deleting all workflows (top left corner button) works fine. **To Reproduce** Steps to reproduce the behavior: 1. Go to `Workflows` 2....
**Is your feature request related to a problem? Please describe.** Let's say that we have a snakemake pipeline that has 30 steps, and let's assume that after 10 steps an...
**Describe the bug** When running a workflow: ``` $ snakemake --cores 70 --snakefile ../../workflow/Snakefile --configfile config/config.yaml --printshellcmds --software-deployment-method conda apptainer --conda-prefix /tmp/cache/conda --wms-monitor http://panoptes_host:10000 ```` I get the message: ```...
Given that a snakemake workflow is launched from panoptes, how would it be best to handle waiting for it? E.g., you could add some kind of queue with redis or...
**Describe the bug** When upgrading snakemake from version 7.31.1 to 7.32.0, workflow run is recorded, but does not show any progress even though the job is complete. In the example...
**Is your feature request related to a problem? Please describe.** I need a way to monitor running `snakemake` pipelines in a production environment, and decided to try `panoptes`. From the...
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Monitor computational workflows in real time