pakiessling

Results 5 comments of pakiessling

Error: MethodError(Matrix{<:Unsigned}

@ccbvib give this a shot https://github.com/kharchenkolab/Baysor/issues/82#issuecomment-1593566888

densmap

Hi, did any one ever end up testing Densmap for scRNA ?

map_cells_to_space "could not determine the shape of object type 'Series'" error

Might be related to this https://github.com/pytorch/pytorch/issues/51112

map_cells_to_space "could not determine the shape of object type 'Series'" error

Issue is fixed by changing enviroment to: name: tangram-env dependencies: - python==3.8.5 - pip==20.2.2 - pytorch==1.4.0 - scipy==1.5.2 - matplotlib-base==3.3.1 - seaborn==0.11.1 - jupyterlab==2.2.6 - nb_conda==2.2.1 - pip: - numpy==1.22...

Analyzing metadata varying across cells of a donor

@j-mitchel Thank you, this is exactly what I wanted to know. Is there a recommendation on the minimum number of cells my cell types should contain?