Paddy Harker

icon company CRUK National Biomarker Centre icon location Manchester icon location Bioinformatician @ CRUK National Biomarker Centre. Interested in genomics, epigenomics and cancer. R, Python3 and Nextflow.

Results 2 issues of Paddy Harker

Return primary bam and index file in fastq_align_bamcmp_bwa subworkflow

## PR checklist Closes #5627 Primary unfiltered alignment bam file and index now returned by the `fastq_align_bamcmp_bwa` subworkflow so that unmapped reads to the primary alignment can accessed. - [x]...

[FEATURE] Return primary alignment bam file and index in nf-core/fastq_align_bamcmp_bwa subworkflow

### Is your feature request related to a problem? Please describe Following on from issue #5564 which was addressed by #5565 where the alignment stats of the primary alignment are...

update subworkflow