Gregory Owens

It's been many months, but I want to say I also have this error and I'm trying to figure out what is going wrong.

I'm not sure if I had the same exact issue, but my problem was when I turned on "kmers_table_to_bed" it gave an error for missing the "convert_kmers_table_to_plink.done" file. I've realized...

Hi, This is the command I used: `gatk GenomicsDBImport \ $tmp \ --genomicsdb-workspace-path /scratch/user/wild_gwas/$genomicsdb/${chr}_$pos \ --intervals $contig \ --batch-size 100` $tmp is a list of 150 gvcfs. $contig is 100kb...

@kgururaj I ran the commands you suggested. > [user@cedar5 bin]$ bash -x TestGenomicsDBJar/run_checks.sh > + [[ hB != hxB ]] > + XTRACE_STATE=-x > + [[ hxB != hxB ]]...

With updated command: > [user@cedar5 bin]$ bash -x TestGenomicsDBJar/run_checks.sh > + [[ hB != hxB ]] > + XTRACE_STATE=-x > + [[ hxB != hxB ]] > + VERBOSE_STATE=+v >...