Shujun Ou

Thank you for working on this. Has this issue being fixed or do you want me to try out the current version? Shujun

Thank you for making the `singularity` version available. The installation was smooth: `singularity pull library://sestaton/default/tephra` `LC_ALL=C singularity run --bind $PWD/data:/data tephra_latest.sif` `cd data` `tephra all -c tephra_config.Chr9.yml ` Then I...

@GuyBaele Just want to follow up on this issue, do you have a fix for this bug? We are seeing the same issue with BEASTv1.10.4 and BEAGLE library v3.2.0.

Dear Sen, Sorry for the delayed reply. You may not use the `--force 1` parameter unless you fail on the first step (EDTA_raw). Some fungus and animal genomes may need...

@kingforest93 How did it go?

Hello, That's good news! Did you run through the unfinished RepeatModeler run? How Did you maje it? For masking differences, you may search other issues for similar discussions. Please let...

Hello @d00bin, Sorry for the delay. First of all, `Low-threshold TE masking for MAKER gene annotation (masked: 1.00%): some_species.fasta.mod.MAKER.masked` this information says the file `some_species.fasta.mod.MAKER.masked` is for MAKER gene annotation,...

@d00bin do these issues resolved?

Is this a non-plant? On Wed, Apr 6, 2022 at 12:49 AM d00bin ***@***.***> wrote: > @oushujun Dear Shujun, > I'm terribly sorry for such a delayed response! > >...

That make sense to me. If EDTA produced no error, then it's running as expected. On Wed, Apr 6, 2022 at 1:23 AM d00bin ***@***.***> wrote: > Is this a...