oterocoronel

evaluate_components crashes when using non-integer gSig

6

I don't know if there is a strong reason to use integers for the values of gSig, but I tried using [2.5, 2.5] and CNMF ran just fine. However, when...

Setting nb and nb_patch to 0 or negative values results in crash

2

I have a relatively low background signal in my recording, so I would like to try cnmf with no background components. I have tried to set nb and nb_patch to...

spatial_update with ellipse crashes for large 4D recording

3

Your setup: 1. Operating System (Linux, MacOS, Windows): Linux 2. Hardware type (x86, ARM..) and RAM: 256 GB RAM 4. Caiman version (e.g. 1.9.12): 1.9.13 6. How you installed Caiman...

Enhancing dot product for sparse matrices during ROI spatial updating

1

When trying to refine the spatial components using the ellipse mode, these lines (lines 891-892 in spatial.py) made it crash because it couldn't allocate enough space in memory: ``` cm[:,...

CNMF seems to be merging components despite setting do_merge = False

1

6. How you installed Caiman (pure conda, conda + compile, colab, ..): conda When running `cnm.fit(images)` I have noticed that this gets logged: `[cnmf.py: fit():603] [3681004] merging` I have set...

SynTrazor crashing after installation

1

After installing SyncTrazor I am getting this error message: I have tried to uninstall and reinstall, but the error persists I am using Windows 11, although I have been able...

How to pass var_name_hdf5 when running mcorr

2

I have some .h5 files that have the data in a field named 'data'. I have tried passing `var_name_hdf5 = 'data'` when adding an additional parameter like this: ``` df.caiman.add_item(...

### Describe the issue: If "h5py" in ops is a list, then the function find_files_open_binaries turns it into a list of lists when doing: `fs = [fs]` This causes the...