Oren Amsalem

Thanks @marwan-abdellah : [tracingSAC1_aftLunch_16.swc.zip](https://github.com/BlueBrain/NeuroMorphoVis/files/5556295/tracingSAC1_aftLunch_16.swc.zip)

Maybe this: [Downloads.zip](https://github.com/BlueBrain/NeuroMorphoVis/files/5597978/Downloads.zip) The original reconstruction is asc, I transformed it to swc using this website: https://neuroinformatics.nl/HBP/morphology-viewer/ Thanks!

Also this [2017-13-02-slice-2-cell-3-rotated.swc.zip](https://github.com/BlueBrain/NeuroMorphoVis/files/7858803/2017-13-02-slice-2-cell-3-rotated.swc.zip) Thanks

Hi @marwan-abdellah , maybe it's unrelated, this is where I got the morphology from: http://neuromorpho.org/neuron_info.jsp?neuron_name=2017-16-05-slice-1-cell-6-rotated thanks

Hi @lagru, Yes `_format_exclude_border` should verify the `exclude_border` is correct, if it is an int/float it should create a tuple from it with the same dim on the input +1,...

Hi @lagru , I agree that your suggestion about test_blob_dog_excl_border, it does makes it much better. But I don't think that the new test is redundant, it tests a different...

Thanks for the comments, I think it does look much better. What do you think? > as `disk_center` is always a tuple of two integers if you look at your...

Thanks for the comments @lagru , I've replied inline. What do you think?

I think there is a bit confusing here on what exactly is needed, As a first step I made this gif so it will be clear what is available: 

Test ```python from pystackreg import StackReg import tifffile as tif #load data and incrase size loaded = tif.imread(BASE_PATH +'/pc12-reg-affine.tif') data = np.repeat(np.repeat(np.repeat(loaded,8,0),3,2),3,1) sr = StackReg(StackReg.AFFINE) %%timeit out_mean_20p = sr.register_transform_stack(data, reference='mean',...