orctyr

icon indicating an email [email protected]

icon company Shanghai Biozeron, China icon location Shanghai icon location Ye Tao, PHD candidate in metagenome and functional genomics study

Results 4 comments of orctyr

One huge cluster

Hi cerebis, 1. BAM file bwa mem -5SP contigs.fasta hic_paired.fastq.gz | samtools view -F 0x904 -bS - > hic2ctg_unsorted.bam samtools sort -@ 8 -n hic2ctg_unsorted.bam hic2ctg #final got hic2ctg.bam file...

One huge cluster

Hi Cerebis, Your cmd: qc3C bam --enzyme Sau3AI --fasta H54_mNGS_megahit.fa --bam hic2ctg_unsorted.bam --output-path qc3c_out. "hic2ctg_unsorted.bam" or "hic2ctg.bam" ? In your qc3C github website, it need sorted bam file "bwa index...

One huge cluster

Hi Cerebis, qc3c bam module log file: DEBUG | 2021-11-23 21:23:39,461 | main | qc3C 0.5 DEBUG | 2021-11-23 21:23:39,463 | main | 3.8.12 | packaged by conda-forge | (default,...

One huge cluster

Hi Cerebis, bin3C-python3 version could not be download successfully here. Could I use bin3C-py2 to go forward? install log: Collecting git+https://github.com/cerebis/bin3C@py3 Cloning https://github.com/cerebis/bin3C (to revision py3) to /tmp/pip-req-build-1vyhcl8u Running command...