memote
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opencobra
memote – the genome-scale metabolic model test suite
1. `memote report` commands should be able to accept JSON files of memote results as input and generate snapshot or diff reports from them. 2. It should also be possible...
We are trying to make a model comparison, but the results do not come out, I don't know why。 This is my code： ``` memote report diff E:/file/latest571_meto.xml E:/file/iHZ565.xml E:/file/iGD1575.xml...
Opening this issue on behalf of Anush @anushchp: #### Problem description > It complains that O2 consuming reactions don’t have fixed bounds. Thermodynamics (using pyTFA: https://github.com/EPFL-LCSB/pytfa/ or matTFA: https://github.com/EPFL-LCSB/mattfa) can...
Opening on behalf of @anushcph #### Problem description >...in our case amino acids, which are actually part of the biomass reaction. The report provides the missing biomass building blocks as...
SBO statistics are not calculated correctly. In the attached screenshot and model example I have either 100% SBO, skipped SBO or errored SBO. I.e. on everything which works I have...
Not only precursors may be blocked but also products.
I am trying to test my model using memote and got the following error: ```bash #AttributeError: 'Config' object has no attribute 'warn' ``` Here is the code I tried from...
The key idea of memote is that > Models should, for the benefit of the community and for research gain, live up to certain standards and minimal functionality. Within the...