Chris Hunter

reduce length of short name of x16s_recover_software [MIXS:0000066]

2

**Current term details** ``` Term name - 16S recovery software Term ID - MIXS:0000066 Structured comment name - x16s_recover_software Definition - Tools used for 16S rRNA gene extraction ``` **Suggested...

to be done after the repo structure is updated to have the mixs directory containing the generated artifacts see #704 In the mixs directory, add an auto generated readme.md file...

create a GSC application ontology

2

This was suggested in CIG meeting in March 2021. "Future Development: create a GSC application ontology, with subsets for each package" I think it was in reference to the ENVO...

G10K and VGP terminology

2

As a community outreach exercise it might be worth making a comparison of GSC terminology to that used by the G10K project(s) which can be found here: https://genome10k.soe.ucsc.edu/wp-content/uploads/2018/07/g10kSubmissionGuide_0.pdf Once we...

broaden use of [MIXS:0001121]

4

**Current term details** ``` Term name - ecosystem(s) adjacent to farm Structured comment name - adjacent_ecosystem Definition - Description of the environmental features that are adjacent to the farm. This...

host of the symbiont taxid [MIXS:0001306]- for Symbiont-associated (SA) package

4

**New term details** ``` Term name - host of the symbiont taxid Structured comment name -symb_host_taxid Definition - NCBI taxon id of the host of the symbiotic organism. Expected value...

**Current term details** ``` Term name - number of standard tRNAs extracted Term ID - MIXS:0000067 Structured comment name - trnas Definition - The total number of tRNAs identified from...

**Current term details** ``` Term name - taxonomic classification Term ID - MIXS:0000064 Structured comment name - tax_class Definition - Method used for taxonomic classification, along with reference database used,...

**Current term details** Please supply the current details of the term that you would like to update: ``` Term name - reference database(s) Term ID - MIXS:0000062 Structured comment name...

Possible update to definition of " feature prediction" [MIXS:0000061]

1

**Current term details** ``` Term name - feature prediction Term ID - MIXS:0000061 Structured comment name - feat_pred Definition - Method used to predict UViGs features such as ORFs, integration...