Brian Ondov

Parametric coloring in the chart could be selected by a dropdown instead of a checkbox. The XML format would have to be modified to allow multiple `` tags. Import scripts...

The checkbox in the chart for collapsing redundant wedges is visible and active even when a dataset is not affected by it, which creates interface confusion (noted in #44).

screen: spurious "no valid k-mers" warning for amino acid sketches

1

Results seem to be okay, so there clearly are valid k-mers. This appears to be only an issue with estimating the set size of the k-mer pool, and an inaccurate...

JSON schema

23

A first pass of the JSON schema is in the Mash repo: https://github.com/marbl/Mash/blob/master/src/mash/schema.json For now, I put k-mers as a separate array parallel to hashes rather than an array of...

Use basenames for input file identifiers in output

1

Mash output (and sketches) currently represent the input file names as given, with paths: `/path/to/input.fasta` It would probably be better to strip them to basenames: `input.fasta` We would just have...