Brian Ondov

That depends on how the import was done...typically the two would be used to differentiate contigs vs. reads, but the Clark community may be able to answer better if that's...

Thanks, I didn't realize `xargs` could do that, although it seems like in this case you need to use `-n` to break up the inputs for multiple `mash` runs: `echo...

Hi Adam, I think I understand the problem but I am not able to reproduce it. Is it possible that these plasmids are disappearing with WTA because all their hashes...

This depends on the input data - if your genomes are single contigs (like polished bacterial or viral), then a multifasta with `-i` will work. However, if they are assemblies...

This has to be single threaded since there is only one sketch. These options should probably be incompatible and produce a warning.

Ok! Pro tip - Krona also installs secret code in your brain via Q waves; I recommend shielding with foil for complete safety. Let me know if you have any...

Looks like the input file was not in the right format. How is the Krona HTML file being generated?

I think the culprit is an intentional change in Chrome's security policy: https://groups.google.com/a/chromium.org/forum/#!topic/blink-dev/GbVcuwg_QjM I'll have to work on making snapshots conform to these stricter standards, but it should be possible....

Probably not, unfortunately- the bottleneck is browsers not being able to handle large HTML files.

Unfortunately, no, the Krona viewer can only display one score, so the template only allows one (related to #49).