ngff
ngff copied to clipboard
ome
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
Context: We were discussing OME-NGFF usages recently with @tischi and I noticed we were going in somewhat separate directions on this topic. I’d like to start the broader discussion to...
I would like to suggest a change to the wording of the OME-NGFF HCS plate specification and add some recommendations about performance for visualization vs. structure of image pyramids per...
_updated June 29, 2022_ This PR is a proposal for adding a spec for tabular data from the [OME NGFF spatial omics hackathon](https://forum.image.sc/t/ome-ngff-spatial-omics-hackathon/57337) and a few subsequent hackathons. This is...
Since v0.2, `/` is the only allowed dimension separator for OME NGFF chunk paths. To be compatible with Zarr arrays in general, it would be great to also allow `.`...
In discussing with the xarray community, the one change to the NGFF specification that needs to occur to prevent errors being raised when opening a multiscale is for each resolution...
Noticed while working on https://github.com/glencoesoftware/bioformats2raw/pull/160.
First update for supporting bioformats2raw output as described in #104. Introduces the concept of "transitional" metadata to allow readers to start supporting extensions that have grown in the community before...
In a few different contexts recently, questions have been (rightly) asked regarding the process for modifying the specification. Likely it's not quite time for something as formal as say https://zarr.dev/zeps/active/ZEP0000.html...
In order to uniquely identify the images that are being generated, this change proposes that a UUID should be included with each multiscale. The UUID can either be generated at...
This is largely a PR to think out loud about possible representations. e.g. this might should be split up by version. Thoughts welcome. http://api.csswg.org/bikeshed/?url=https://raw.githubusercontent.com/joshmoore/ngff/spec-compatibility/latest/index.bs