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Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
I want to point out that affine transformations like ``` { "type": "affine", "affine": [1, 2, 3, 4, 5, 6] } ``` require "input" and "output" to be specified to...
Currently, when viewing an NGFF Plate in vizarr or napari, the pyramid is created by using 1 down-sampled tile from the first Image of every Well. In vizarr (https://github.com/hms-dbmi/vizarr/pull/119) we...
@folterj was looking for sample datasets and came across three (unsuitable) locations: * https://github.com/ome/ome-zarr-py/tree/master/tests/data (dataless to keep the small) * https://www.openmicroscopy.org/2020/11/04/zarr-data.html (older version) * A hackmd where we are preparing...
is it presence of `.omero` key within `.zattrs`? and then taking the schema of that version ```shell ❯ jq '.omero.version' .zattrs "0.4" ``` correct?
This PR adds a review for NGFF RFC1. This review was jointly written with @jluethi and @vuhlmann.
Thanks Josh for the huge amount of work and patience that has gone into developing and proposing this process.
The purpose of this issue is to discuss whether `multiscales` should be a collection of multiscale metadata, or just a single instance of multiscale metadata. I.e., should ome-ngff support multiple...
RFC: Zarr v3
This is an RFC proposal for adopting Zarr v3 as the new storage format for OME-Zarr. It is a followup to the discussions in #206 and on [image.sc](https://forum.image.sc/t/adopt-zarr-v3-in-ome-zarr/84786). Briefly, this...
Per Josh Moore's request, several of us at Janelia have submitted a single review of RFC-1. We reviewed the latest version as of the start of the review period on...
The spec should express the units of the quantity represented in an image. This is a pretty important piece of metadata about an image; units are essential for interpreting images...