Ole Kristian Tørresen

I get the same issue. Has this been addressed? It seems I have toil version 3.14.0.

@adamnovak I'm updating to 3.24.0 now, and restarting cactus, so hopefully that will work. The filesystem is BeeGFS. It seems that versions previous to 7 could only create hardlinks in...

@adamnovak At least I do not get this specific error anymore, but another: "TypeError: _runner() got an unexpected keyword argument 'defer'" This is the same as #2854 I guess. Our...

What I have been doing so far is using all HiC data to scaffold each assembly/haplotype by itself. If there are large differences between the haplotypes, the resulting scaffolding might...

Doesn't that require trio data? We don't have that for our species. I guess it is not straightforward doing similar with just HiFi + HiC. tor. 24. feb. 2022, 20:32...

Hi @zwets. @natir didn't ask about licensing the code, but rather that you clarify what license gfatools is released under. Not having one can cause confusion. I see parts of...

@zwets, ah, I see. Sorry for the misattribution of the comment. You agree with OP, and I agree with you then.

I would also be interested in such a tutorial.

Hi, take a look at YaHS: https://github.com/c-zhou/yahs It is quite well regarded and easy to use. It is true that hifiasm only phases the contigs (*hap1* and *hap2*), but you...

Why do you need to adjust the assembly size? The output from GenomeScope is an estimate, and not the ground truth. It is better to evaluate the assemblies with such...