oldkingh4

Thank you for your reply! I used these two parameters: --use_potentials and --affinity_mw_correction. If I remove both of them, the predicted conformation looks like this, which seems even more unreasonable....

> Did this happen when using or not using the --use_potentials flag?使用或不使用 --use_potentials 标志时是否发生这种情况？ https://github.com/jwohlwend/boltz/issues/532#issuecomment-3166722384

> 在测试相同的 yaml 文件时，我没有看到相同的问题。您在其他综合体上也有这个问题吗？可能还值得尝试删除预处理的文件。 Thank you for your reply. Could you please tell me how to delete the preprocessed files? I don't quite understand. By the way, did you deploy...

Or is it because I didn't use --use_msa_server?

Thank you all for your answers. The problem has been solved. I re-downloaded boltz-2 on WSL (Windows Subsystem for Linux, i.e., the Linux subsystem of Windows) and successfully predicted the...