uberon

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This PR implements the idea proposed in #3564 for allowing AI agents (or in fact any editor, AI or not) to use “temporary” term IDs that are later replaced by...

gouttegd

Fix typos in chorda tendinea term labels and synonyms (issue #3441)

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Fixes #3441 - Changed 'chorda tendineae' to 'chorda tendinea' (singular form) - Updated synonym 'chordae tendinea' to 'chordae tendineae' (plural form) - Normalized related references throughout the ontology - Used...

cmungall

Fix logical definition of 'pigment epithelium of eye'

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## Summary - Relaxed the logical definition of 'pigment epithelium of eye' (UBERON:0007625) to subclass axioms - Replaced intersection_of statements with direct is_a and part_of relationships - This prevents the...

cmungall

Automatic ID allocation for AI-created PRs

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## Introduction The use of AI agents (such as Dragon AI) that automatically open pull requests to change the ontology creates a particular problem regarding the allocation of term IDs....

gouttegd

Review the need for issues/contributor.owl

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One of the custom steps in the Uberon pipeline is the merging of the [issue/contributor.owl](https://github.com/obophenotype/uberon/blob/master/src/ontology/issues/contributor.owl) file into the ontology. That file is supposed to contain “contributor“ annotations that are automatically...

gouttegd

Could potentially specify unix function for generating timestamp, but just trying text for now. Properties expressed in OBO using examples copied from uberon edit file. Not sure how we test...

dosumis

Add systematic script to find ALL redundant SubClassOf axioms

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## Summary • Developed a systematic Perl script to find ALL terms with redundant SubClassOf axioms that duplicate intersection_of definitions • Script identifies 303 terms with 375 total redundant axioms...

cmungall

Fixes #3427 NTR- epithelium of anorectum

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Added a new term. Needed for CL [#2674](https://github.com/obophenotype/cell-ontology/pull/2674)

Caroline-99

Add specific bronchopulmonary segments

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Currently curating a dataset for HCA lung for CELLxGENE, and Gloria Pryhuber and her team have assigned their samples to the specific bronchopulmonary segment of the lung. We did not...

jychien

Various CHEBI entities asserted as direct subclasses of IC

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**Uberon term** It appears latest release is asserting various CHEBI chemical entities, for example glycogen http://purl.obolibrary.org/obo/CHEBI_28087 are direct subclasses of BFO independent continuant... **Bug description** See https://ontobee.org/ontology/rdf/UBERON?iri=http://purl.obolibrary.org/obo/CHEBI_28087

DanBerrios