obenno

microsynteny plot mixed genes from different species with the same chr name

1

Hi, Thanks a lot for the wonderful tools! I've been using mcscan pipeline to annotate homolog genes between wild (Glycine soja) and cultivated soybean (Glycine max) with their reference data...

Hi, Thanks for the amazing tool. I found a little problem in misopy/sam_utils.py. https://github.com/yarden/MISO/blob/1ca049faa6f122751db25e8be49f04a695260557/misopy/sam_utils.py#L254 If the input bam includes secondary alignment (which is default for many mapping tools), the `len(read)`...

readGTF split issue

7

Hi, Thanks a lot for developing xpore! I'm working on some non-model organisms, and testing xpore with our own pipeline. The transcripts were assembled with stringtie, and xpore was installed...

Hi Yarden, Thanks for this wonderful tool as well as MISO. I'm trying to run MISO on multiple samples, I read through the documentation of rnaseqlib, there is some part...