Nichole Wespe

TypeError due to integer division change in python3

5

Hi, I am running BESST 2.2.8 in a python3 environment and get the following error: ``` Traceback (most recent call last): File "/home/ubuntu/anaconda3/bin/runBESST", line 4, in __import__('pkg_resources').run_script('BESST==2.2.8', 'runBESST') File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/pkg_resources/__init__.py",...

rename full header

10

Hello, I'd like to use seqtk rename to rename fasta headers from something like ">k141_2 flag=3 multi=4.0678 len=200" to ">sequence1". My command is: "seqtk rename input_file.fa sequence > output_file.fa". However,...

Empty CDS file from gff2seq

7

Hello, I am getting an empty CDS file from running gff2seq with no error message. My command is `anchorwave gff2seq -i GCF_003119195.2_ASM311919v2_genomic.gff -r GCF_003119195.2_ASM311919v2_genomic.fna -o cds.fa` The genomic data is...