NVucic-AbSci

Chimera detection --uchime_ref unexpected behaviour

6

Hello, I've been using --uchime_ref to identify chimeras providing a list of reference sequences in FASTA format. I noticed that vsearch does not report match with highest score when there...

Inconsistent Percentage of Identity Calculations with 'X' Characters in DIAMOND BLASTP Output

1

When running the following command: root@8a6cc3e3fbcb:/opt# diamond blastp -q test.fa -d test.dmnd -o out.tsv --more-sensitive --outfmt 6 qseqid sseqid full_qseq full_sseq pident qlen slen length gapopen --matrix PAM30 --no-self-hits --masking...