Nicole

RuntimeError: Failed to parse newick tree

5

I keep receiving the error found in the "slurm.hal0082.131857976.err.txt" file. My newick tree is in the "drosophila.txt" file. I am unsure of what is incorrect about the tree. Any feedback...

ValueError: shape mismatch

5

Hello, I have created all of the files to run phylo-hmrf with the correct formatting and file names. I am not using hg38 so I commented out lines 387-393 in...

AttributeError: 'module' object has no attribute 'cut_general_graph'

2

Hello, I am having trouble with the pygco installation. I attempted all of the various suggestions for installation including pip install gco-wrapper which appeared to work successfully. I installed the...