Nathan Sheffield

LOLA is going to just treat your regions exactly as you provide them. So, it assumes you've pre-processed them to be the exact size you want them to be. It...

@vpnagraj it actually wouldn't be too hard to add another field in the shiny app called 'padding', which could be useful. What do you think? we would just then use...

Well... sort of. We should talk, this is a complicated issue. I have some thoughts.

Just some more thoughts on this... This idea is circling back to some of our original thoughts about splitting the app into the "processing" component and the "visualization" component. It...

@vpnagraj @nmagee any thoughts on this?

Here's some code that actually implements a good chunk of this: ``` #' Function that monitors a folder and run a function when a file arrives in the #' monitored...

> this would require us to store the region sets (and custom universes, if any) that users submit, correct? well -- for about 60 seconds, yes... those can be deleted...

This is also related to #30... it would be a full implementation of that idea. Our original approach was to use tabs, but didn't fully complete the idea in #30....

I am formalizing this with a new R package that will abstract away the splitting, called [shinyDepot](https://github.com/databio/shinyDepot)

yeah, that's very very similar... I am approaching it in a different way, which is a little more complicated, but more powerful... that will get us part of the way...