Niklas Schandry
Niklas Schandry
Hello, I would like to use prokka to create annotations while keeping the fasta headers produced by prodigal. I am using a tool downstream that depends on the prodigal-produced headers....
I have tried to address issues with charliecloud. https://github.com/nextflow-io/nextflow/issues/3566 Should be adressed by adding a lockfile to the parent directory of the cache. Adding lockfiles to the cache is prohibited...
## Bug report Running [email protected] together with [email protected] yields an error: `error: can't run directory images from storage (hint: run by name)` ### Expected behavior and actual behavior The expected...
### Description of the bug When providing several samples that should be mapped to different genomes in a samplesheet, the pairing between sample (group) and genome is ignored. Expected behaviour:...
As of 24.03.0-edge nextflow's charliecloud driver has gained support for registry. This PR adds quay.io as the default registry for charliecloud.
This adresses #5192. Instead of placing the process-container inside the process work directory, it is created in a folder that can be defined via `charliecloud.containerStore`, or by default in `work/charliecloud_store`....
This is not a `pandas-genomics` specific issue, but I came across this link via https://pandas-genomics.readthedocs.io/en/latest/. It appears someone forgot to renew hall-lab.org and this domain is now used to advertise...
Hello, this adds test files for the genomeassembler pipeline. The files are ONT (10.14) and pacbio HiFi reads that assemble to A.thaliana Col-0 Chr1 region 5MB-7MB.
Hello, I ran into an issue where `ch-image pull` gives an error whenever I try to run it: `error: can’t unlink: part_a91d96a12e98e16c570e2fc88a976f3a26752c3934df068a2e3ee6ffc72b43c2.tar.gz: No such file or directory` This seems to...