Nathaniel Bennett
Nathaniel Bennett
Thanks for providing this yml for CUDA 11.6! Due to the variation in GPU types and drivers that users have access to, we are not able to make one yml...
1 minute seems correct for 150 residues on a Turing GPU. Newer GPUs will run inference much faster
@truatpasteurdotfr, yes we would accept user contributions for different versions of the .yml file.
The "T" in T4 stands for Turing which means this GPU has the Turing architecture. Since then NVIDIA has come out with the Ampere, Ada Lovelace, and Hopper architectures (in...
Can you send the output structure from RFdiffusion and the output structure from MPNN-FR?
Can you send the command you used to generate the diffusion designs?
The outputs of RFdiffusion look fine but they are getting messed up in MPNN. Can you try using the latest version of the `dl_binder_design` scripts? I have modified them to...
It's possible to write the scripts in Biopython, it will just require some work. You will need to go through the script and do all of the chain parsing with...
[mpnn_example.zip](https://github.com/RosettaCommons/RFdiffusion/files/12176843/mpnn_example.zip) Here is an example of what the structure looks like after MPNN. The script does an automatic cycle of Rosetta FastRelax so the side chains will not be clashing...