nponts

GPU for HiCCUPS - Cuda 12.0

1

Hi, I want to use my GPUs to run HiCCUPS. I have Cuda 12, what juicer tool version should I use? Thanks! NP

Hi, The tools looks awesome however I run into a division by zero error: File /opt/miniconda3/envs/jupyterlab/lib/python3.12/site-packages/shapesimilarity/shapesimilarity.py:40, in shape_similarity(shape1, shape2, rotations, checkRotation) 38 min_frechet_distance = frechet_dist 39 # divide by Math.sqrt(2)...

Tabular-to-Fasta version 1.1.0 not working properly

1

Does not add a new line between two concatenated sequences. Version 1.1.1 works fine though!

Please add phylogeny_converter

1

I should be in the toolshed. Thank you!

Alert of syntax warning

3

Hi, Not really a blocking issue yet, just a warning on a bad syntax: SyntaxWarning: invalid escape sequence '\s' It occurs on 12 lines, running under python 3.12.3 (ShortStack was...