Natasha Pavlovikj

@marinemicrobe , the bioconda DRAM 1.5.0 package is fixed and doesn't give the error mentioned above, so please make sure you have the 1.5.0 version installed from bioconda and not...

The Linux build fails with: ``` ... ##[warning]Free disk space on / is lower than 5%; Currently used: 95.07% ##[warning]Free disk space on / is lower than 5%; Currently used:...

@KatharinaHoff , _bioconda_ is community based project, so anyone can add/modify recipe - it doesn't need to be only the one the created the recipe. There is no Python version...

I also would like to add that I tried adding the valid GROMACS `cmake` flags that are not supported by SSAGES in https://github.com/SSAGESproject/SSAGES/blob/fb178779371cf8d7bbc25ce6b86f31b79395489c/hooks/gromacs/CMakeLists.txt#L167; however, they are still not recognized and...

Thanks for the update @hhg7 . Is it possible to add `regions_of_interest` and `LICENSE` in `defiant-1.1.4.zip` as well? As of now, the bioconda recipe builds `defiant` and `roi`, and the...

@hhg7 , many thanks for updating the tarball! We created the recipe, and now `defiant` is available as a `bioconda` package, https://anaconda.org/bioconda/defiant, for both Linux and Mac. Since there is...

Hi, I am not sure if this is related or not, but for some nanopore sequences with **minialign 0.5.3-325-g336091e** I am getting: **"*** glibc detected *** minialign: free(): invalid next...

Hi @ocxtal, Thanks for getting back to me. Please find below 2 E. coli sequences. I used the E. coli K12 MG1655 reference from NCBI, so I believe that is...

Dear @ocxtal , thank you so much for fixing this issue in a timely manner! I re-ran my sequences that failed earlier, and everything aligned successfully this time. Thanks again!...

Thanks @ocxtal ! My input data is nanopore reads, and I think I will use the default index parameters for now. Another question - one of my genomes is circular,...