novikk
novikk
Hi! The easiest way for me to debug this is to get the fastq file. Is it possible in this case? Thanks
You can send it via email to ivan.delarubia at upf.edu Thanks!
Hi @Kirovez , remember to add the "--fastq" flag. In the upcoming updates this won't be necessary but it is still required right now.
Hello! Please check if there are any errors when running the build.sh script
It should be at the same folder as the build.sh file Can you clone the repo again, run the build.sh script and upload the output?
Hi Ilya, how large is the file, and how much memory available do you have?
And what is the size of the largest read? Is it possible for you to send me the fastq via email so that I can check what's going on? Thanks
Hi @Kirovez I've checked the files you provided and I've found the problem. The issue is that these files were basecalled on windows, so there is an extra character before...
Hello, yes, it will probably have problems with 14M reads (either time or memory problems) but should be OK with the 2.5M reads. Does this problem happen at the very...
Hi @jamlover! Glad you managed to run the clustering step on those big datasets. Regarding your question, it looks like you run RATTLE with the `--iso` option. This creates isoform...