Baoting Nong

fail to import prody

7

```-> % python Python 3.9.12 | packaged by conda-forge | (main, Mar 24 2022, 23:22:55) [GCC 10.3.0] on linux Type "help", "copyright", "credits" or "license" for more information. >>> import...

``` -> % clinker examples/*.gbk -p plot.html [15:29:13] INFO - Starting clinker [15:29:13] INFO - Parsing files: [15:29:13] INFO - A.alliaceusCBS536.65.gbk [15:29:13] INFO - A.burnettiiMST-FP2249.gbk /dat1/nbt2/miniconda3/envs/clinker/lib/python3.12/site-packages/Bio/Seq.py:2880: BiopythonWarning: Partial codon, len(sequence)...

ValueError: invalid literal for int() with base 10: 'cached'

5

I have encountered an error when running telescope. could you please help me? thanks. ``` Traceback (most recent call last): File "/dsk2/who/nbt/miniconda3/envs/telescope_env/bin/telescope", line 8, in sys.exit(main()) File "/dsk2/who/nbt/miniconda3/envs/telescope_env/lib/python3.6/site-packages/telescope/__main__.py", line 95,...

I can not reproduce your example code

3

I have encountered an error! ``` > sim.groups

can not run masif_seed_pdl1.ipynb

3

when run the refinement steps, ``` with open(os.path.join(refined_dir, 'input.list'), 'w') as f: f.write('\n'.join([target + ' ' + m for m in matches])) ``` got error ``` NameError Traceback (most recent...