Nashwa M Ahmed comments

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                                            Nashwa M Ahmed

[question] Use of specific NCBI assemblies for bactopia --accessions

Hi Robert, Thanks for your response! I'm currently running bactopia locally with the following set of 10 (though I plan to analyze ~2000 including both NCBI and ENA assemblies): ```...

[question] Use of specific NCBI assemblies for bactopia --accessions

Can you recommend a `max_memory` and `max_time` parameter for this number and length of assemblies?

[question] Use of specific NCBI assemblies for bactopia --accessions

Sorry about that, I didn't realize so many were suppressed. Here's a new [table](https://github.com/user-attachments/files/15842675/accessions.txt) and [list](https://github.com/user-attachments/files/15842688/acc_10.txt) of 10.

[question] Use of specific NCBI assemblies for bactopia --accessions

Hi, I hope you are well. I successfully ran bactopia with a modified accession file ``` accession GCF_001857405.1 GCF_007624845.1 ``` using accessions that work individually (i.e. `bactopia --accession GCF_001857405.1`). It...