py-ard
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nmdp-bioinformatics
HLA ARD Reduction in Python
Fix `ping` mode for all Fixes #321 - When in `ping` mode, Alleles that were not already in `lgx` mode were not reduced properly. For those alleles educe to `lgx`...
``` >>> allele = ard.redux("DRB4*01:03:01", 'lgx') >>> allele 'DRB4*01:01' >>> allele = ard.redux("DRB4*01:03:13", 'lgx') >>> allele 'DRB4*01:03' >>> allele = ard.redux("DRB4*01:03:19", 'lgx') >>> allele 'DRB4*01:03' ``` This allele is included...
`pandas` and `numpy` dependency for `py-ard` can be problematic when used as libraries in other applications or newer versions of Python. `pandas` and `numpy` drop/add Python versions and introduce incompatibilities....
I noticed that the py-ard implementation for converting v2 to v3 typings is not yet complete: https://github.com/nmdp-bioinformatics/py-ard/blob/d43a035361cc90cef9bf0c98475ec90396b06a4f/pyard/db.py#L586-L600 I was wondering if this is still on the roadmap and/or if I...
Change IMGT labels/text to **IPD** or **IPD/IMGT-HLA** to be correct with the organization's name or database.
Start with one typing a P group level and one typing reported at G group level and illustrate the process for determining if the two genotypes are high resolution matched...
to foster EMR integration, pyard should add support for GLSC formatted input
The 4th field of HLA nomenclature includes: 1. intron variants 2. UTR variants Due to complexities in the typing of UTRs and also/especially the dynamic nature of their definition in...
> In the future it would be nice to have an option of a user-defined broad splits table. Especially to emulate behavior of HapLogic or research matching which don’t use...