py-ard
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Published
20 hours ago •
nmdp-bioinformatics
nmdp-bioinformatics
Make `ping` mode default
Fix ping mode for all
Fixes #321
- When in
pingmode, Alleles that were not already inlgxmode were not reduced properly. For those alleles educe tolgxfirst.
List of problematic alleles, their P group, the updated lgx reduction and the test to see if they match.
| Allele | P | lgx | P == lgx |
|---|---|---|---|
| DRB4*01:03 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:01 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:02 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:03 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:04 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:05 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:06 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:07 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:08 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:09 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:10 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:11 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:12 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:13 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:14 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:15 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:16 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:17 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:18 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:19 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:20 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:21 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:22 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:23 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:24 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:25 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:26 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:27 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:28 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:29 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:30 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:31 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:32 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:33 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:34 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:35 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:01:01 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:01:03 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:01:04 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:01:05 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:01:06 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:01:07 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:01:08 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:01:09 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:01:10 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:01:11 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:01:12 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:01:14 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:01:15 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:01:16 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:01:17 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:01:18 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:02:01 | DRB4*01:01P | DRB4*01:01 | True |
| DRB4*01:03:02:02 | DRB4*01:01P | DRB4*01:01 | True |
| C*02:10:02 | C*02:02P | C*02:02 | True |
